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1.
Environ Microbiol Rep ; 5(6): 911-24, 2013 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-24249300

RESUMO

In this study, we developed and validated a culture-independent method for diversity surveys to specifically detect endospore-forming Firmicutes. The global transcription regulator of sporulation (spo0A) was identified as a gene marker for endospore-forming Firmicutes. To enable phylogenetic classification, we designed a set of primers amplifying a 602 bp fragment of spo0A that we evaluated in pure cultures and environmental samples. The amplification was positive for 35 strains from 11 genera, yet negative for strains from Alicyclobacillus and Sulfobacillus. We also evaluated various DNA extraction methods because endospores often result in reduced yields. Our results demonstrate that procedures utilizing increased physical force improve DNA extraction. An optimized DNA extraction method on biomass pre-extracted from the environmental sample source (indirect DNA extraction) followed by amplification with the aforementioned primers for spo0A was then tested in sediments from two different sources. Specifically, we validated our culture-independent diversity survey methodology on a set of 8338 environmental spo0A sequences obtained from the sediments of Lakes Geneva (Switzerland) and Baikal (Russia). The phylogenetic affiliation of the environmental sequences revealed a substantial number of new clades within endospore-formers. This novel culture-independent approach provides a significant experimental improvement that enables exploration of the diversity of endospore-forming Firmicutes.


Assuntos
Proteínas de Bactérias/genética , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Esporos Bacterianos/genética , Fatores de Transcrição/genética , Sequência de Bases , Biodiversidade , DNA Bacteriano/genética , Genes Bacterianos , Marcadores Genéticos , Bactérias Gram-Positivas Formadoras de Endosporo/classificação , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Dados de Sequência Molecular , Técnicas de Amplificação de Ácido Nucleico , Filogenia , RNA Ribossômico 16S/genética , Alinhamento de Sequência , Análise de Sequência de DNA , Esporos Bacterianos/crescimento & desenvolvimento , Esporos Bacterianos/metabolismo
2.
Extremophiles ; 16(6): 829-39, 2012 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-22956355

RESUMO

The Tinto River (Huelva, Spain) is a natural acidic rock drainage environment produced by the bio-oxidation of metallic sulfides from the Iberian Pyritic Belt. A geomicrobiological model of the different microbial cycles operating in the sediments was recently developed through molecular biological methods, suggesting the presence of iron reducers, methanogens, nitrate reducers and hydrogen producers. In this study, we used a combination of molecular biological methods and targeted enrichment incubations to validate this model and prove the existence of those potential anaerobic activities in the acidic sediments of Tinto River. Methanogenic, sulfate-reducing, denitrifying and hydrogen-producing enrichments were all positive at pH between 5 and 7. Methanogenic enrichments revealed the presence of methanogenic archaea belonging to the genera Methanosarcina and Methanobrevibacter. Enrichments for sulfate-reducing microorganisms were dominated by Desulfotomaculum spp. Denitrifying enrichments showed a broad diversity of bacteria belonging to the genera Paenibacillus, Bacillus, Sedimentibacter, Lysinibacillus, Delftia, Alcaligenes, Clostridium and Desulfitobacterium. Hydrogen-producing enrichments were dominated by Clostridium spp. These enrichments confirm the presence of anaerobic activities in the acidic sediments of the Tinto River that are normally assumed to take place exclusively at neutral pH.


Assuntos
Bactérias/metabolismo , Biodiversidade , Sedimentos Geológicos/microbiologia , Methanobrevibacter/metabolismo , Methanosarcina/metabolismo , Anaerobiose , Bactérias/genética , Bactérias/isolamento & purificação , Técnicas de Tipagem Bacteriana , Sequência de Bases , DNA Arqueal/química , DNA Bacteriano/química , Ecossistema , Sedimentos Geológicos/química , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Bactérias Gram-Positivas Formadoras de Endosporo/isolamento & purificação , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Concentração de Íons de Hidrogênio , Metano/metabolismo , Methanobrevibacter/genética , Methanobrevibacter/isolamento & purificação , Methanosarcina/genética , Methanosarcina/isolamento & purificação , Dados de Sequência Molecular , Nitratos/metabolismo , Filogenia , Espanha , Sulfatos/metabolismo
3.
Extremophiles ; 15(5): 565-71, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21761211

RESUMO

An anaerobic, halophilic, and fermentative bacterium, strain S200(T), was isolated from a core sample of a deep hypersaline oil reservoir. Cells were rod-shaped, non-motile, and stained Gram-positive. It grew at NaCl concentrations ranging from 6 to 26% (w/v), with optimal growth at 15% (w/v) NaCl, and at temperatures between 25 and 47°C with an optimum at 40-45°C. The optimum pH was 7.3 (range 6.2-8.8; no growth at pH 5.8 and pH 9). The doubling time in optimized growth conditions was 3.5 h. Strain S200(T) used exclusively carbohydrates as carbon and energy sources. The end products of glucose degradation were lactate, formate, ethanol, acetate, H(2), and CO(2). The predominant cellular fatty acids were non-branched fatty acids C(16:1), C(16:0), and C(14:0). The G + C mole% of the DNA was 32.7%. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain S200(T) formed a distinct lineage within the family Halobacteroidaceae, order Halanaerobiales, and was most closely related to Halanaerobaculum tunisiense DSM 19997(T) and Halobacteroides halobius DSM 5150(T), with sequence similarity of 92.3 and 91.9%, respectively. On the basis of its physiological and genotypic properties, strain S200(T) is proposed to be assigned to a novel species of a novel genus, for which the name Halanaerocella petrolearia is proposed. The type strain of Halanaerocella petrolearia is strain S200(T) (=DSM 22693(T) = JCM 16358(T)).


Assuntos
Metabolismo dos Carboidratos/fisiologia , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Filogenia , Anaerobiose/fisiologia , Sequência de Bases , Genótipo , Bactérias Gram-Positivas Formadoras de Endosporo/citologia , Bactérias Gram-Positivas Formadoras de Endosporo/isolamento & purificação , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Salinidade
4.
Int J Syst Evol Microbiol ; 59(Pt 1): 150-5, 2009 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19126740

RESUMO

A polyphasic taxonomic study was performed on six strains of an unknown Gram-positive, non-motile, spore-forming, short oval to rod-shaped bacterium isolated from a swine-manure storage pit. In addition to these strains, an isolate deposited in the Culture Collection of the University of Göteborg (Sweden) was found to be biochemically related to the manure strains. The major end products of metabolism included acetate and succinate but not butyrate. Comparative 16S rRNA gene sequencing confirmed that all these isolates were closely related to each other and formed a hitherto unknown lineage within the clostridial rRNA XIVa cluster of organisms. On the basis of phylogenetic, biochemical and phenotypic evidence, it is proposed that the unknown bacterium represents a novel genus and species, for which the name Robinsoniella peoriensis gen. nov., sp. nov. is proposed. The type strain of Robinsoniella peoriensis is PPC31T (=CCUG 48729T =NRRL B-23985T).


Assuntos
Infecções por Bactérias Gram-Positivas/microbiologia , Bactérias Gram-Positivas Formadoras de Endosporo/classificação , Bactérias Gram-Positivas Formadoras de Endosporo/isolamento & purificação , Esterco/microbiologia , Suínos/microbiologia , Animais , Técnicas de Tipagem Bacteriana , DNA Bacteriano/análise , DNA Ribossômico/análise , Genes de RNAr , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Humanos , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Especificidade da Espécie
5.
Syst Appl Microbiol ; 31(2): 126-40, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18406093

RESUMO

Bacterial contamination of raw milk can originate from different sources: air, milking equipment, feed, soil, faeces and grass. It is hypothesized that differences in feeding and housing strategies of cows may influence the microbial quality of milk. This assumption was investigated through comparison of the aerobic spore-forming flora in milk from organic and conventional dairy farms. Laboratory pasteurized milk samples from five conventional and five organic dairy farms, sampled in late summer/autumn and in winter, were plated on a standard medium and two differential media, one screening for phospholipolytic and the other for proteolytic activity of bacteria. Almost 930 isolates were obtained of which 898 could be screened via fatty acid methyl ester analysis. Representative isolates were further analysed using 16S rRNA gene sequencing and (GTG)(5)-PCR. The majority of aerobic spore-formers in milk belonged to the genus Bacillus and showed at least 97% 16S rRNA gene sequence similarity with type strains of Bacillus licheniformis, Bacillus pumilus, Bacillus circulans, Bacillus subtilis and with type strains of species belonging to the Bacillus cereus group. About 7% of all isolates may belong to possibly new spore-forming taxa. Although the overall diversity of aerobic spore-forming bacteria in milk from organic vs. conventional dairy farms was highly similar, some differences between both were observed: (i) a relatively higher number of thermotolerant organisms in milk from conventional dairy farms compared to organic farms (41.2% vs. 25.9%), and (ii) a relatively higher number of B. cereus group organisms in milk from organic (81.3%) and Ureibacillus thermosphaericus in milk from conventional (85.7%) dairy farms. One of these differences, the higher occurrence of B. cereus group organisms in milk from organic dairy farms, may be linked to differences in housing strategy between the two types of dairy farming. However, no plausible clarification was found for the relatively higher number of thermotolerant organisms and the higher occurrence of U. thermosphaericus in milk from conventional dairy farms. Possibly this is due to differences in feeding strategy but no decisive indications were found to support this assumption.


Assuntos
Bactérias Aeróbias/classificação , Bactérias Aeróbias/isolamento & purificação , Biodiversidade , Alimentos Orgânicos/microbiologia , Bactérias Gram-Positivas Formadoras de Endosporo/classificação , Bactérias Gram-Positivas Formadoras de Endosporo/isolamento & purificação , Leite/microbiologia , Animais , Bactérias Aeróbias/genética , Bactérias Aeróbias/metabolismo , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Ácidos Graxos/análise , Genes de RNAr , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Dados de Sequência Molecular , Filogenia , Reação em Cadeia da Polimerase/métodos , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Homologia de Sequência do Ácido Nucleico
6.
Lett Appl Microbiol ; 46(3): 344-9, 2008 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-18266641

RESUMO

AIMS: The aim of this study was to develop an approach based on a reverse transcriptase (RT)-PCR/denaturing gradient gel electrophoresis (DGGE) for the detection of the functional genes nifH and anfH in Paenibacillus durus. METHODS AND RESULTS: Two sets of primers were employed to study the expression of the nitrogen fixation genes in a pure-culture system of P. durus grown in media with increasing concentrations of ammonium (NH(4)(+)), tungsten (W) or molybdenum (Mo). The results obtained indicate that the expression of nitrogenase genes from P. durus can take place in the presence of relatively high levels of fixed nitrogen. It was also observed that the addition of 20 micromol l(-1) molybdenum and 2 mmol l(-1) tungstate did not interfere in the mRNA levels of nifH and anfH genes. CONCLUSIONS: Our results demonstrate the presence and transcription of nifH and anfH in P. durus under a variety of growth conditions. A specific set of primers was designed for the detection of the alternative system for nitrogen fixation in P. durus. SIGNIFICANCE AND IMPACT OF THE STUDY: The RT-PCR/DGGE system enables the rapid gathering of incremental data about the regulation of conventional and alternative nitrogenase genes in P. durus strains.


Assuntos
Proteínas de Bactérias/metabolismo , Eletroforese em Gel de Poliacrilamida/métodos , Regulação Bacteriana da Expressão Gênica , Bactérias Gram-Positivas Formadoras de Endosporo/crescimento & desenvolvimento , Fixação de Nitrogênio , Oxirredutases/metabolismo , Compostos de Amônio Quaternário/metabolismo , Reação em Cadeia da Polimerase Via Transcriptase Reversa/métodos , Proteínas de Bactérias/genética , Meios de Cultura , Bactérias Gram-Positivas Formadoras de Endosporo/classificação , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Molibdênio/metabolismo , Oxirredutases/genética , Tungstênio/metabolismo
7.
J Microbiol Biotechnol ; 17(6): 913-8, 2007 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18050908

RESUMO

A Gram-positive, aerobic, rod-shaped, nonmotile, endospore-forming bacterium, designated Gsoil 349T, was isolated from soil of a ginseng field and characterized using a polyphasic approach. Comparative analysis of 16S rRNA gene sequences revealed that the strain Gsoil 349T belongs to the family Paenibacillaceae, and the sequence showed closest similarity with Cohnella thermotolerans DSM 17683T (94.1%) and Cohnella hongkongensis DSM 17642T (93.6%). The strain showed less than 91.3% 16S rRNA gene sequence similarity with Paenibacillus species. In addition, the presence of MK-7 as the major menaquinone and anteiso-C(15:0), iso-C(16:0), and C(16:0) as major fatty acids suggested its affiliation to the genus Cohnella. The G+C content of the genomic DNA was 53.4 mol%. On the basis of its phenotypic characteristics and phylogenetic distinctiveness, strain Gsoil 349T should be treated as a novel species within the genus Cohnella for which the name Cohnella panacarvi sp. nov. is proposed. The type strain is Gsoil 349T (=KCTC 13060T = DSM 18696T).


Assuntos
Bactérias Gram-Positivas Formadoras de Endosporo/classificação , Panax/microbiologia , Microbiologia do Solo , Xilanos/metabolismo , Composição de Bases , Ácidos Graxos/análise , Bactérias Gram-Positivas Formadoras de Endosporo/isolamento & purificação , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Panax/crescimento & desenvolvimento , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Vitamina K 2/análise
8.
Extremophiles ; 11(4): 577-83, 2007 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-17505776

RESUMO

Three strains of a novel thermophilic, strictly aerobic, Gram-positive, spore-forming hemo-organotrophic bacterium were isolated from three hot springs in the region of Rupi basin, Bulgaria as producers of amylolytic enzymes. Their 16S rRNA gene sequences (first 500 nucleotides) were very similar (99.8%). Strains were able to ferment a wide spectrum of carbohydrates such as sugars, polyols, and polysaccharides like xylan, glycogen and starch. Optimal growth was observed at 55-58 degrees C, and pH at 6.0-6.5. Phylogenetic analysis of the whole 16S rRNA gene sequence clustered the strain R270(T) with the representatives of the genus Anoxybacillus and with Geobacillus tepidamans. The G + C content of the genomic DNA was 41.7%. DNA-DNA hybridization analysis revealed low homology with the closest relatives (32.0 mol% homology to Geobacillus tepidamans). Fatty acid profile (major fatty acids iso-C15:0 and iso-C17:0) confirmed the affiliation of the strain to the genus Anoxybacillus. On the basis of the data presented here, we propose that strain R270(T), represents a new species of the genus Anoxybacillus for which, we recommend the name Anoxybacillus rupiensis sp. nov. (=DSM 17127(T) = NBIMCC 8387(T)). The 16S rRNA gene sequence data of a strain R270(T) have been deposited in the EMBL databases under the accession number AJ879076.


Assuntos
Bactérias Gram-Positivas Formadoras de Endosporo/classificação , Bactérias Gram-Positivas Formadoras de Endosporo/isolamento & purificação , Fontes Termais/microbiologia , Microbiologia da Água , Composição de Bases , Sequência de Bases , Bulgária , Metabolismo dos Carboidratos , DNA Bacteriano/análise , DNA Ribossômico/análise , Bases de Dados Genéticas , Ácidos Graxos/metabolismo , Fermentação , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Bactérias Gram-Positivas Formadoras de Endosporo/crescimento & desenvolvimento , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Filogenia , RNA Ribossômico 16S , Ribotipagem , Temperatura
9.
J Antibiot (Tokyo) ; 60(4): 251-5, 2007 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-17456975

RESUMO

Urukthapelstatin A, a novel cyclic peptide, was isolated from the cultured mycelia of marine-derived Thermoactinomycetaceae bacterium Mechercharimyces asporophorigenens YM11-542. The peptide was purified by solvent extraction, silica gel chromatography, ODS flash chromatography, and finally by preparative HPLC. Urukthapelstatin A dose-dependently inhibited the growth of human lung cancer A549 cells with an IC(50) value of 12 nM. Urukthapelstatin A also showed potent cytotoxic activity against a human cancer cell line panel.


Assuntos
Antibióticos Antineoplásicos/biossíntese , Fermentação , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Leucina/análogos & derivados , Microbiologia da Água , Antibióticos Antineoplásicos/isolamento & purificação , Antibióticos Antineoplásicos/farmacologia , Linhagem Celular Tumoral , Humanos , Leucina/biossíntese , Leucina/isolamento & purificação , Leucina/farmacologia , Tiazóis/isolamento & purificação , Tiazóis/farmacologia
10.
J Antibiot (Tokyo) ; 60(4): 256-60, 2007 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-17456976

RESUMO

The new cyclic peptide antibiotic, urukthapelstatin A, has been isolated from a culture of Thermoactinomycetaceae bacterium Mechercharimyces asporophorigenens YM11-542. The structure of urukthapelstatin A was elucidated by NMR, MS, Marfey analysis, chiral HPLC and X-ray crystal analyses.


Assuntos
Antibióticos Antineoplásicos/química , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Leucina/análogos & derivados , Tiazóis/química , Microbiologia da Água , Cristalografia por Raios X , Leucina/química , Espectroscopia de Ressonância Magnética
11.
FEMS Microbiol Ecol ; 54(1): 87-95, 2005 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-16329975

RESUMO

An anaerobic coculture was enriched from a hexachlorocyclohexane (HCH) polluted soil. The coculture reductively dechlorinates the beta-HCH isomer to benzene and chlorobenzene in a ratio of 0.5-2 depending on the amount of beta-HCH degraded. The culture grows with H(2) as electron donor and beta-HCH as electron acceptor, indicating that dechlorination is a respiratory process. Phylogenetic analysis indicated that the coculture consists of two bacteria that are both related to gram-positive bacteria with a low G + C content of the DNA. One bacterium was identified as a Dehalobacter sp. This bacterium is responsible for the dechlorination. The other bacterium was isolated and characterized as being a Sedimentibacter sp. This strain is not able to dechlorinate beta-HCH. The Dehalobacter sp. requires the presence of Sedimentibacter for growth and dechlorination, but the function of the latter bacterium is not clear. This is the first report on the metabolic dechlorination of beta-HCH by a defined anaerobic bacterial culture.


Assuntos
Bactérias Anaeróbias/metabolismo , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Hexaclorocicloexano/metabolismo , Microbiologia do Solo , Biodegradação Ambiental , Técnicas de Cocultura , Halogênios/metabolismo , Oxirredução
12.
Mikrobiologiia ; 74(3): 401-9, 2005.
Artigo em Russo | MEDLINE | ID: mdl-16119855

RESUMO

The distribution and species diversity of aerobic organotrophic bacteria in the Dagan high-temperature oil field (China), which is exploited via flooding, have been studied. Twenty-two strains of the most characteristic thermophilic and mesophilic aerobic organotrophic bacteria have been isolated from the oil stratum. It has been found that, in a laboratory, the mesophilic and thermophilic isolates grow in the temperature, pH, and salinity ranges characteristic of the injection well near-bottom zones or of the oil stratum, respectively, and assimilate a wide range of hydrocarbons, fatty acids, lower alcohols, and crude oil, thus exhibiting adaptation to the environment. Using comparative phylogenetic 16S rRNA analysis, the taxonomic affiliation of the isolates has been established. The aerobic microbial community includes gram-positive bacteria with a high and low G+C content of DNA, and gamma and beta subclasses of Proteobacteria. The thermophilic bacteria belong to the genera Geobacillus and Thermoactinomyces, and the mesophilic strains belong to the genera Bacillus, Micrococcus, Cellulomonas, Pseudomonas, and Acinetobacter. The microbial community of the oil stratum is dominated by known species of the genus Geobacillus (G. subterraneus, G. stearothermophilus, and G. thermoglucosidasius) and a novel species "Geobacillus jurassicus." A number of novel thermophilic oil-oxidizing bacilli have been isolated.


Assuntos
Bactérias Aeróbias/classificação , Petróleo/microbiologia , Bactérias Aeróbias/genética , Bactérias Aeróbias/metabolismo , Técnicas de Tipagem Bacteriana , China , Bactérias Gram-Positivas Formadoras de Endosporo/classificação , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Oxirredução , Petróleo/metabolismo , Filogenia , Proteobactérias/classificação , Proteobactérias/genética , Proteobactérias/metabolismo , RNA Ribossômico 16S/genética
13.
Lett Appl Microbiol ; 40(3): 172-7, 2005.
Artigo em Inglês | MEDLINE | ID: mdl-15715640

RESUMO

AIMS: The objective of this study was to identify compounds responsible for medicinal off-flavours produced by different species and strains of Alicyclobacillus in orange juice using a combination of chromatographic-coupled olfactometric techniques and gas chromatography-mass spectrometry (GC-MS). METHODS AND RESULTS: Each of five Alicyclobacillus strains was inoculated into separate juice samples and incubated up to 28 days at 45 degrees C. Aroma compounds in the juice were analysed by GC-olfactometry (GC-O) and confirmed using GC-MS. GC-O identified three components that were described as medicinal/antiseptic. Microbial populations were enumerated at timed intervals by spiral plating onto Alicyclobacillus agar. Within 28 days incubation, all five strains produced medicinal off-aromas from guaiacol and at least one halogenated phenol. SIGNIFICANCE AND IMPACT OF THE STUDY: This is the first study to evaluate individual juice aroma components produced by Alicyclobacillus species using olfactometry and to demonstrate that at least three medicinal off-flavour compounds are associated with the growth of alicyclobacilli in orange juice.


Assuntos
Bebidas/microbiologia , Cromatografia Gasosa/métodos , Citrus/microbiologia , Microbiologia de Alimentos , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Odorantes , Bebidas/análise , Cromatografia Gasosa-Espectrometria de Massas , Guaiacol/análise , Guaiacol/metabolismo , Fenóis/análise , Fenóis/metabolismo
14.
Mikrobiol Z ; 66(3): 64-71, 2004.
Artigo em Russo | MEDLINE | ID: mdl-15456220

RESUMO

The process of colonization of hydrophilic (glass) and hydrophobic (polysterene) carriers by pure cultures of methanotrophs Methylocystis parvus UCM B-3490T, Methylococcus capsulatus UCM B-3030, as well as by their cultures mixed with Bacillus megaterium UCM B 5723T and Pseudomonas putida VKPM B-4188 under the conditions efficient for methanotrophic bacteria. M. parvus demonstrated the highest intensity of this process on the above carriers owing to high hydrophobic cell surface. Both methanotrophs colonized the glass surface more quickly with formation of microcolonies on carriers after 6 days of incubation in pure and mixed cultures with B. megaterium. The number of bacilli on these carriers quickly decreased. In the mixed cultures with P. putida the glass and polysterene colonization intensity decreased, while the amount of pseudomonas on carriers increased.


Assuntos
Biofilmes/crescimento & desenvolvimento , Bactérias Aeróbias Gram-Negativas/crescimento & desenvolvimento , Bactérias Gram-Positivas Formadoras de Endosporo/crescimento & desenvolvimento , Metano/metabolismo , Proteobactérias/crescimento & desenvolvimento , Bacillus megaterium/crescimento & desenvolvimento , Bacillus megaterium/metabolismo , Técnicas de Cocultura , Vidro , Bactérias Aeróbias Gram-Negativas/metabolismo , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Methylococcus capsulatus/crescimento & desenvolvimento , Methylococcus capsulatus/metabolismo , Methylocystaceae/crescimento & desenvolvimento , Methylocystaceae/metabolismo , Poliestirenos , Proteobactérias/metabolismo , Pseudomonas putida/crescimento & desenvolvimento , Pseudomonas putida/metabolismo , Especificidade da Espécie
15.
J Bacteriol ; 186(17): 5782-9, 2004 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-15317783

RESUMO

Sequencing of a cellulosome-integrating gene cluster in Acetivibrio cellulolyticus was completed. The cluster contains four tandem scaffoldin genes (scaA, scaB, scaC, and scaD) bounded upstream and downstream, respectively, by a presumed cellobiose phosphorylase and a nucleotide methylase. The sequences and properties of scaA, scaB, and scaC were reported previously, and those of scaD are reported here. The scaD gene encodes an 852-residue polypeptide that includes a signal peptide, three cohesins, and a C-terminal S-layer homology (SLH) module. The calculated molecular weight of the mature ScaD is 88,960; a 67-residue linker segment separates cohesins 1 and 2, and two approximately 30-residue linkers separate cohesin 2 from 3 and cohesin 3 from the SLH module. The presence of an SLH module in ScaD indicates its role as an anchoring protein. The first two ScaD cohesins can be classified as type II, similar to the four cohesins of ScaB. Surprisingly, the third ScaD cohesin belongs to the type I cohesins, like the seven ScaA cohesins. ScaD is the first scaffoldin to be described that contains divergent types of cohesins as integral parts of the polypeptide chain. The recognition properties among selected recombinant cohesins and dockerins from the different scaffoldins of the gene cluster were investigated by affinity blotting. The results indicated that the divergent types of ScaD cohesins also differ in their preference of dockerins. ScaD thus plays a dual role, both as a primary scaffoldin, capable of direct incorporation of a single dockerin-borne enzyme, and as a secondary scaffoldin that anchors the major primary scaffoldin, ScaA and its complement of enzymes to the cell surface.


Assuntos
Proteínas de Bactérias/genética , Proteínas de Transporte/genética , Proteínas de Transporte/metabolismo , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Proteínas Nucleares/genética , Proteínas Nucleares/metabolismo , Proteínas de Bactérias/metabolismo , Proteínas de Bactérias/fisiologia , Proteínas de Transporte/química , Proteínas de Ciclo Celular , Celulossomas/genética , Celulossomas/metabolismo , Proteínas Cromossômicas não Histona , DNA Bacteriano/química , DNA Bacteriano/isolamento & purificação , Enzimas/metabolismo , Proteínas Fúngicas , Genes Bacterianos , Bactérias Gram-Positivas Formadoras de Endosporo/química , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Bactérias Gram-Positivas Formadoras de Endosporo/ultraestrutura , Glicoproteínas de Membrana/genética , Glicoproteínas de Membrana/fisiologia , Microscopia Eletrônica de Varredura , Dados de Sequência Molecular , Peso Molecular , Família Multigênica , Proteínas Nucleares/química , Fases de Leitura Aberta , Filogenia , Ligação Proteica , Sinais Direcionadores de Proteínas , Estrutura Terciária de Proteína , Análise de Sequência de DNA , Homologia de Sequência
16.
Anal Chem ; 76(3): 585-91, 2004 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-14750850

RESUMO

The past decade has seen an increased interest in the application of several physicochemical analytical techniques for the rapid detection and identification of microorganisms. We report the development of UV resonance Raman (UVRR) spectroscopy for the reproducible acquisition of information rich Raman fingerprints from endospore-forming bacteria belonging to the genera Bacillus and Brevibacillus. UVRR was conducted at 244 nm, and spectra were collected in typically 60 s. Cluster analyses of these spectra showed that UVRR spectroscopy could be used to discriminate between these microorganisms to species level, and the clustering pattern from this phenotypic classification was highly congruent with phylogenetic trees constructed from 16S rDNA sequence analysis. Therefore, we conclude that UVRR spectroscopy when coupled with chemometrics constitutes a powerful approach to the characterization and speciation of microorganisms.


Assuntos
Bacillus/classificação , Técnicas de Tipagem Bacteriana/métodos , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Espectrofotometria Ultravioleta/métodos , Análise Espectral Raman/métodos , Bacillus/química , Bacillus/genética , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Filogenia , Reprodutibilidade dos Testes
17.
Appl Microbiol Biotechnol ; 64(1): 112-9, 2004 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-14556038

RESUMO

Paenibacillus polymyxa ATCC 12321 produced more acetic acid and less butanediol from xylose than from glucose. The product yields from xylose were ethanol (0.72 mol/mol sugar), (R,R)-2,3-butanediol (0.31 mol/mol sugar), and acetate (0.38 mol/mol sugar) while those from glucose were ethanol (0.74 mol/mol sugar), (R,R)-2,3-butanediol (0.46 mol/mol sugar), and acetate (0.05 mol/mol sugar). Higher acetate kinase activity and lower acetate uptake ability were found in xylose-grown cells than in glucose-grown cells. Furthermore, phosphoketolase activity was higher in xylose-grown cells than in glucose-grown cells. In fed-batch culture on xylose, glucose feeding raised the butanediol yield to 0.56 mol/mol sugar and reduced acetate accumulation to 0.04 mol/mol sugar.


Assuntos
Acetato Quinase/metabolismo , Acetatos/análise , Aldeído Liases/metabolismo , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Xilose/metabolismo , Acetatos/metabolismo , Acetoína/análise , Bacillus/metabolismo , Biomassa , Butileno Glicóis/análise , Butileno Glicóis/metabolismo , Dióxido de Carbono/análise , Meios de Cultura/química , Etanol/análise , Etanol/metabolismo , Fermentação , Formiatos/análise , Glucose/metabolismo , Glicólise , Hidrogênio/análise , Concentração de Íons de Hidrogênio , Cinética , Ácido Láctico/análise , Via de Pentose Fosfato , Ácido Succínico/análise
18.
Int J Syst Evol Microbiol ; 53(Pt 6): 1791-9, 2003 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-14657106

RESUMO

Two anaerobic, benzaldehyde-converting bacteria were isolated from an anaerobic upflow anaerobic sludge bed (UASB)-reactor treating potato starch waste water. Strain BOR-Y(T) converted benzaldehyde to benzoate and benzylalcohol in approximately equimolar concentrations. Benzaldehyde conversion did not support growth. Strain BOR-Y(T) was Gram-positive and rod-shaped, and its cells were slightly thickened in the middle. The strain was a mesophilic spore-former that grew between 15 and 40 degrees C, with optimum growth at 30-37 degrees C. The optimum pH for growth was pH 7.0. Strain BOR-Y(T) grew on a wide range of carbohydrates and some other carbon sources including yeast extract, cysteine and serine. The G+C content of its DNA was 42 mol%. According to physiological characteristics and 16S rRNA gene sequence analysis, confirmed by DNA-DNA hybridization with its phylogenetic neighbours, strain BOR-Y(T) belongs to a novel genus of cluster XII of the clostridia, namely Soehngenia; the name Soehngenia saccharolytica is proposed for the type species (type strain BOR-Y(T)=DSM 12858(T)=ATCC BAA-502(T)). Strain BR-10(T) reduced benzaldehyde to benzylalcohol. This conversion was coupled to growth. In a medium containing yeast extract, the presence of benzaldehyde resulted in the accumulation of more than twofold more cells. Strain BR-10(T) was a Gram-positive organism that was characterized by oval- or rod-shaped cells with oval ends, which occurred singly, in pairs or sometimes in chains. The strain was moderately thermophilic and grew between 20 and 60 degrees C, with optimum growth at 45 degrees C. The optimum pH for growth was between pH 7.0 and 7.5. Strain BR-10(T) grew on a wide range of carbon sources including carbohydrates, yeast extract, casein and some amino acids. The G+C content of its DNA was 32 mol%. As determined by 16S rRNA gene sequence analysis, strain BR-10(T) represents a novel species of cluster XIVa of the clostridia; the name Clostridium amygdalinum is proposed for this novel species (type strain BR-10(T)=DSM 12857(T)=ATCC BAA-501(T)).


Assuntos
Benzaldeídos/farmacocinética , Clostridium/classificação , Bactérias Gram-Positivas Formadoras de Endosporo/classificação , Filogenia , Anaerobiose , Clostridium/crescimento & desenvolvimento , Clostridium/isolamento & purificação , Clostridium/metabolismo , Meios de Cultura , Bactérias Gram-Positivas Formadoras de Endosporo/crescimento & desenvolvimento , Bactérias Gram-Positivas Formadoras de Endosporo/isolamento & purificação , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Dados de Sequência Molecular , Esgotos/microbiologia
19.
Int J Syst Evol Microbiol ; 53(Pt 2): 435-441, 2003 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-12710609

RESUMO

Endospore-forming bacteria were isolated from insect-pathogenic nematodes, Heterorhabditis spp., from three diverse geographical locations. Spindle-shaped sporangia of these bacteria adhere to the free-living infective stage of the nematode, which carries them to new insect hosts, where the bacterium reproduces. These isolates were characterized based on phenotypic and chemotaxonomic properties and 16S rRNA gene sequences. Analysis of the 16S rRNA gene placed the isolates within the genus Paenibacillus. The isolates shared higher sequence similarities with each other (95.1-100%) than they did with any other named species within the genus (89.2-94%). Paenibacillus macquariensis, Paenibacillus azoreducens, Paenibacillus amylolyticus and Paenibacillus durus were among the species with highest sequence similarity to these isolates. The isolates shared a high degree of phenotypic similarity and were easily distinguished from closely related members of the genus. Anteiso-C15:0 and C16:0 were among the major fatty acid types and the DNA G + C content was approximately 44 mol% in all isolates. DNA-DNA similarity studies revealed genomic heterogeneity among the isolates, such that they are likely to represent more than one species. Two of the isolates (both from a Heterorhabditis megidis isolate from Estonia) are phenotypically distinguishable from the others and are proposed as a single species, Paenibacillus nematophilus sp. nov. The type strain for this novel species is NEM1aT (=DSM 13559T =NCIMB 13845T). The other isolates, although closely related to the proposed species, are likely to represent at least one, but most likely two, novel species.


Assuntos
Bactérias Gram-Positivas Formadoras de Endosporo/classificação , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Nematoides/microbiologia , RNA Ribossômico 16S/análise , Animais , Composição de Bases , DNA Bacteriano/química , DNA Bacteriano/genética , Ácidos Graxos/análise , Bactérias Gram-Positivas Formadoras de Endosporo/genética , Bactérias Gram-Positivas Formadoras de Endosporo/crescimento & desenvolvimento , Dados de Sequência Molecular , RNA Ribossômico 16S/genética
20.
Lett Appl Microbiol ; 36(1): 9-14, 2003.
Artigo em Inglês | MEDLINE | ID: mdl-12485334

RESUMO

AIMS: This study was undertaken to identify the bacterium and metabolic products contributing to a disinfectant taint in shelf-stable fruit juice and to determine some of the growth conditions for the organism. METHODS AND RESULTS: Microbiological examination of tainted and untainted fruit juice drinks detected low numbers of acid-dependent, thermotolerant, spore-forming bacteria in the tainted juices only. The presence of omega-cyclohexyl fatty acids was confirmed in two of the isolates by cell membrane fatty acid analysis. The isolates were subsequently identified as Alicyclobacillus acidoterrestris by partial 16S rDNA sequencing. Studies on the isolates showed growth at pH 2.5-6.0 and 19.5-58 degrees C. Gas chromatography/mass spectrometry (GC/MS) was used to identify and quantify 2,6-dibromophenol (2,6-DBP) and 2,6-dichlorophenol (2,6-DCP) in the tainted juice. Challenge studies in a mixed fruit drink inoculated with the two isolates and the type strain of A. acidoterrestris, incubated at 44-46 degrees C for 4 d, showed the production of both metabolites, which were confirmed and quantified by GC/MS. CONCLUSIONS: The results show that A. acidoterrestris can produce 2,6-DBP and 2,6-DCP in shelf-stable juices. SIGNIFICANCE AND IMPACT OF THE STUDY: This is the first report detailing experimental methodology showing that A. acidoterrestris can produce 2,6-DCP in foods. Control of storage temperatures (to < 20 degrees C) immediately after processing may provide an effective control measure for the fruit juice industry to prevent spoilage by A. acidoterrestris.


Assuntos
Desinfetantes/análise , Microbiologia de Alimentos , Frutas/microbiologia , Bactérias Gram-Positivas Formadoras de Endosporo/isolamento & purificação , Bactérias Gram-Positivas Formadoras de Endosporo/metabolismo , Clorofenóis/análise , Contagem de Colônia Microbiana , Ácidos Graxos/análise , Bactérias Gram-Positivas Formadoras de Endosporo/crescimento & desenvolvimento , Concentração de Íons de Hidrogênio , Fenóis/análise , Esporos Bacterianos/crescimento & desenvolvimento , Esporos Bacterianos/isolamento & purificação
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